plot_score_animals.Rd
Plot frequency of animal model scores in abstracts.
plot_score_animals( df, keywords = animal_keywords, case = FALSE, bins = NULL, colour = "steelblue3", col.abstract = Abstract, col.pmid = PMID, title = NULL )
df | Data frame containing abstracts. |
---|---|
keywords | Character vector. Vector containing keywords. The animal
model score is calculated based on these keywords. How much weight a keyword
in |
case | Boolean. If |
bins | Integer. Specifies how many bins are used to plot
the distribution. If |
colour | String. Colour of histogram. |
col.abstract | Symbol. Column containing abstracts. |
col.pmid | Symbol. Column containing PubMed-IDs. |
title | String. Plot title. |
Histogram displaying the distribution of animal scores in abstracts.
Plots a frequency distribution of animal model scores in abstracts of a
data frame. The animal model score is influenced by the choice of
terms in keywords
.
Plotting the distribution can help deciding if the
terms are well-chosen, or in choosing the right threshold to decide
which abstracts are considered to contain animal models.
Other score functions:
assign_topic()
,
calculate_score_animals()
,
calculate_score_biomarker()
,
calculate_score_patients()
,
calculate_score_topic()
,
plot_score_biomarker()
,
plot_score_patients()
,
plot_score_topic()