plot_mir_count_threshold.Rd
Plot occurrence count of distinct miRNA names over different thresholds.
plot_mir_count_threshold( df, start = 1, end = 5, bins = NULL, colour = "steelblue3", col.mir = miRNA, col.pmid = PMID, title = NULL )
df | Data frame containing columns with miRNAs and PubMed-IDs. |
---|---|
start | Integer or float. Must be greater than 0 and smaller than
|
end | Integer or float. Must be greater than 0 and greater than
|
bins | Integer. Optional. Only necessary if |
colour | String. Colour of bar plot. |
col.mir | Symbol. Column containing miRNAs. |
col.pmid | Symbol. Column containing PubMed-IDs. |
title | String. Plot title. |
Bar plot counting the occurrence of miRNA names above different thresholds.
Plot occurrence of distinct miRNA names over different thresholds.
These thresholds can either be absolute values or floating values between 0
and 1.
If the thresholds are absolute values, number of distinct miRNA names
mentioned in at least n abstracts are plotted, where n
is the range of thresholds defined by start
and end
.
If the thresholds are floating values, bins
must be specified as well.
Then the umber of distinct miRNA names
mentioned in at least n abstracts over bins
are plotted, where n is the
range of thresholds
between start
and end
.
Overall, plotting can help in identifying if the abstracts
at hand mention different miRNAs in a balanced way, or if there are few miRNAs
dominating the field.
count_mir_threshold()
, count_mir()
, plot_mir_count()
Other count functions:
count_mir_threshold()
,
count_mir()
,
count_snp()
,
plot_mir_count()