Compare count of miRNA names between different topics

Compare count of miRNA names between different topics.

compare_mir_count(
  df,
  mir,
  topic = NULL,
  normalize = TRUE,
  col.topic = Topic,
  col.mir = miRNA,
  col.pmid = PMID,
  title = NULL
)

Arguments

df	Data frame containing columns for miRNA names, topics, and PubMed-IDs.
mir	Character vector. Vector specifying which miRNA names to compare.
topic	Character vector. Optional. Vector specifying which topics to compare.
normalize	Boolean. If normalize = TRUE, plot the proportion of abstracts mentioning a miRNA name compared to all abstracts in a topic. If normalize = FALSE, plot the absolute number of abstracts mentioning a miRNA in a topic.
col.topic	Symbol. Column containing topic names.
col.mir	Symbol. Column containing miRNA names.
col.pmid	Symbol. Column containing PubMed-IDs.
title	String. Plot title.

Value

Bar plot comparing the count of miRNA names between different topics.

Details

Compare count of miRNA names between different topics by plotting the number of abstracts mentioning the miRNA in a topic. This count can either be normalized, thus plotting the proportion of abstracts mentioning a miRNA name compared to all abstracts of a topic, or it can be not normalized, thus plotting the absolute number of abstracts mentioning a miRNA per topic.

See also

compare_mir_count_log2(), compare_mir_count_unique()

Other compare functions: compare_mir_count_log2(), compare_mir_count_unique(), compare_mir_terms_log2(), compare_mir_terms_scatter(), compare_mir_terms_unique(), compare_mir_terms()